Nih dbgap

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National Institutes of Health

  • Insert your PIV card into your smart card reader or sign in using your mobile PIV-D credentials.

Dbgap.ncbi.nlm.nih.gov   DA: 22 PA: 11 MOZ Rank: 34

NIH Launches dbGaP, a Database of Genome Wide …

The initial release of dbGaP contains data on two studies: the Age-Related Eye Diseases Study (AREDS), a 600-subject, multicenter, case-controlled, prospective study of the clinical course of age-related macular degeneration and age-related cataracts that was supported by the National Eye Institute (www.nei.nih.gov); and the National Institute

Nih.gov   DA: 11 PA: 50 MOZ Rank: 63

NCBI's Database of Genotypes and Phenotypes: dbGaP

Information in dbGaP is organized as a hierarchical structure and includes the accessioned objects, phenotypes (as variables and datasets), various molecular assay data (SNP and Expression Array data, Sequence and Epigenomic marks), analyses and documents.

Pubmed.ncbi.nlm.nih.gov   DA: 23 PA: 10 MOZ Rank: 36

dbgap.ncbi.nlm.nih.gov

  • Insert your PIV card into your smart card reader or sign in using your mobile PIV-D credentials.

Dbgap.ncbi.nlm.nih.gov   DA: 22 PA: 11 MOZ Rank: 37

A Rare Cause of Acute Abdomen in a 59-Year-Old Male

  • Spontaneous celiac artery dissection is a rare phenomenon as most cases of celiac artery dissection are iatrogenic secondary to surgery [].Spontaneous celiac artery dissection is most often not isolated but associated with aortic artery dissection due to the celiac axis arising from the abdominal aorta [].Celiac artery dissection may also propagate into the …

Ncbi.nlm.nih.gov   DA: 20 PA: 25 MOZ Rank: 50

dbGaP Request Procedures to Access Individual-Level Data

  • dbGaP Request Procedures to Access Individual-Level Data Developed and operated by the National Library of Medicine’s National Center for Biotechnology Information (NCBI), dbGaP archives and distributes data from which will be reviewed by an NIH Data Access Committee at the appropriate NIH Institute or Center

Dbgap.ncbi.nlm.nih.gov   DA: 22 PA: 29 MOZ Rank: 57

Researcher Auth Service Initiative Data Science at NIH

  • NIH deployed a RAS-dbGaP Visa and associated services that allow researchers to log in to RAS one time to access any integrated repository and run an analysis for up to 15 days without re-authenticating
  • NIH staff or extramural researchers can log into integration systems/applications using their NIH or eRA Commons credentials.

Datascience.nih.gov   DA: 19 PA: 35 MOZ Rank: 61

NIH Issued Statement On Use Of dbGaP In The Cloud. NLM

  • NIH Issued Statement On Use Of dbGaP In The Cloud
  • 2015 April 09 [posted] [Editor's Note: This is a reprint of an announcement published on NLM/NCBI List ncbi-announce, an e-mail announcement list available from the NLM/NCBI
  • To subscribe to this list, please see the ncbi-announce -- NCBI announcements

Nlm.nih.gov   DA: 15 PA: 50 MOZ Rank: 73

How to Access NHLBI Data NHLBI, NIH

  • dbGaP is a phenotype and genotype data repository hosted by NCBI which contains datasets funded by NHLBI and other NIH institutes
  • The database contains genomic and other “omics” data and related phenotypic data for many NHLBI cohorts and studies, including data generated by the Trans-Omics for Precision Medicine ( TOPMed ) program.

Nhlbi.nih.gov   DA: 17 PA: 50 MOZ Rank: 76

NCBI Insights : Database of Genotypes and Phenotypes (dbGaP)

Attention dbGaP submitters! Join us on November 3, 2021 at 12PM US eastern time to learn about data submission and processing improvements to dbGaP, NIH’s database of Genotype and Phenotype, which contains individual-level data associated with human research studies.You will see how we have made submission easier through the Submission Portal using automated …

Ncbiinsights.ncbi.nlm.nih.gov   DA: 29 PA: 11 MOZ Rank: 50

NIH Fast Healthcare Interoperability Resources

  • The Health Level Seven International® (HL7®) Fast Healthcare Interoperability Resources (FHIR®) standard enables electronic healthcare data exchange through an application programming interface (API)
  • An API is a specified set of protocols and data standards that establish the ground rules by which one information system directly communicates with another.

Datascience.nih.gov   DA: 19 PA: 17 MOZ Rank: 47

Trans-Omics for Precision Medicine (TOPMed

  • Currently, there are over 30,000 whole genome sequences in dbGAP and approximately 45,000 more will be added to dbGaP in early 2018
  • The dbGaP was developed to archive and distribute data from studies that have investigated the interaction of genotype and phenotype, including all genome-wide association studies supported by the NIH.

Nhlbi.nih.gov   DA: 17 PA: 50 MOZ Rank: 79

NCBI Insights : View GEO, SRA, or dbGaP data tracks in

  • Data tracks from dbGaP display significantly-associated SNPs as a scatterplot, with the color and Y-axis position of SNPs corresponding to the P-value in the selected GWAS study (Figure 4)
  • Refer to the complete Legends for the NCBI graphical viewers for more information on the visual rendering of the data in these tracks and how to configure

Ncbiinsights.ncbi.nlm.nih.gov   DA: 29 PA: 50 MOZ Rank: 92

NOT-OD-17-044: Request for Information on

  • In 2007, NIH developed dbGaP to archive and distribute the results of human genotype-phenotype studies that fall under these policies, in a manner that is consistent with the consent of the study participants whose genomic data are to be shared
  • dbGaP, a controlled-access data repository, currently serves as a central portal to submit, locate

Grants.nih.gov   DA: 14 PA: 45 MOZ Rank: 73

NCBI Insights : Nov 3 Webinar: dbGaP submission

Attention dbGaP submitters! Join us on November 3, 2021 at 12PM US eastern time to learn about data submission and processing improvements to dbGaP, NIH’s database of Genotype and Phenotype, which contains individual-level data associated with human research studies.You will see how we have made submission easier through the Submission Portal …

Ncbiinsights.ncbi.nlm.nih.gov   DA: 29 PA: 41 MOZ Rank: 85

NOT-OD-19-023: Update to NIH Management of Genomic …

NIH anticipates that this updated GSR access model will be appropriate for the majority of genomic datasets available through NIH-designated data repositories under the NIH GDS Policy (e.g., dbGaP), and that it will thereby reduce the need to request controlled-access to individual-level genomic data unless it is necessary to address specific

Grants.nih.gov   DA: 14 PA: 45 MOZ Rank: 75

Article: Cross-validation and cross-study validation of

  • We then perform a cross-study validation with exome samples from other studies in the NIH dbGaP database serving as the external data set
  • There we obtain an accuracy of 70% with top Pearson ranked SNPs obtained from the original exome data set
  • Our study shows that even with a small sample size we can obtain moderate to high accuracy with

Inderscience.com   DA: 20 PA: 19 MOZ Rank: 56

NIH Data Sharing Policies

  • dbGaP (for registration) NIH-designated data repository (for data) NHLBI: NHLBI Policy for Data Sharing from Clinical Trials and Epidemiological Studies: Encourages all applicants to include a plan to address data sharing or to state why data sharing is not possible
  • For studies that meet the the following criteria, applicants are are required

Nlm.nih.gov   DA: 15 PA: 39 MOZ Rank: 72

Meta-analysis of sample-level dbGaP data reveals novel

  • Meta-analysis of sample-level dbGaP data reveals novel shared genetic link between body height and Crohn's disease Hum Genet
  • doi: 10.1007/s00439-020-02250-3.

Pubmed.ncbi.nlm.nih.gov   DA: 23 PA: 10 MOZ Rank: 52

Obtaining Access to Controlled Data NCI Genomic Data Commons

  • The GDC requires authentication through eRA Commons and dbGaP authorization to access controlled data.
  • In order to obtain access to controlled data available in the GDC, PIs must first obtain an NIH eRA Commons account and then obtain authorization to access the data through the NIH database of Genotypes and Phenotypes …

Gdc.cancer.gov   DA: 14 PA: 45 MOZ Rank: 79

ATA SE ERTIFICATION AGREEMENT (April 19, 2019, version)

The National Institutes of Health (NIH) has established NIH-designated data repositories (e.g., database of Genotypes and Phenotypes (dbGaP), Sequence Read Archive (SRA), NIH Established Trusted Partnerships) for securely storing and sharing controlled-access human data submitted to NIH under the NIH Genomic Data Sharing (GDS) Policy.

Dbgap.ncbi.nlm.nih.gov   DA: 22 PA: 11 MOZ Rank: 54

DbGaP-FHIR-API-Docs/quickstart.md at production · ncbi

  • Besides ResearchStudy, the server also contains Patient and Observation data
  • This is individual-level data simulated to resemble TOPMed's new, harmonized data.

Github.com   DA: 10 PA: 50 MOZ Rank: 82

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